Mod modules not loading in designs

I keep running into issues with ship designs containing references to the AE module package. I get no error messages or crashes, but any ship containing references to mod modules loads with the mod modules missing. Creating a copy of the mod module and using that instead of the original seems to work correctly though. I was able to work around this issue by cut-pasting the entire AE module collection into my UserDesigns, after which everything seems to load correctly.
Here's an example ship which appears in UserDesigns correctly, but when loaded is missing the reactor and its radiators. Replacing the reactor with a stock one makes it load correctly.


CraftBlueprint Dart Drone
Modules
Aggressive Remote Control 1 0 null 0 0
10.0 MW 4mm Internal Railgun 1 25.904 null 0 0
88mm Turreted 3 - Cannon 2 3.0277 null 0 0
[AE] 100 kN Methane NTR 2 1 0 null 0 0
200 kg Methane Tank 2 9.7414 null 0 4
600 kg Methane Tank 2 11.032 null 0 3
200 kg Methane Tank 2 18.75 null 0 7
200 kg Methane Tank 2 14.544 null 0 8
600 kg Methane Tank 2 4.8982 null 0 1
600 kg Methane Tank 2 4.509 null 0 6
600 kg Methane Tank 2 17.497 null 0 5
[AE] 10.1 MW Reactor 2 21.461 null 0 0
6x1 Boron Nitride Radiator 2 0.24011 [AE] 10.1 MW Reactor 1.5708 0
6x1 Boron Nitride Radiator 2 1.4803 [AE] 10.1 MW Reactor 1.5708 0
Armor
Shape Dodecagonal
Concave true
AspectRatio 2.32
ArmorLayers
Spider Silk 0.001 0 0 1 1 0
Beta Titanium 0.001 0 0 1 1 0
Graphite Aerogel 0.05 0 0 1 1 0
Polyethylene 0.002 0 0 1 1 0



I'll attach my UserDesigns as well as the AE modules package so you can test this for yourself.
UserDesigns.txt (42.08 KB)
Apophys Electrics Standard Modules v1.5.txt (87.39 KB)